PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40049.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 307aa    MW: 34672.8 Da    PI: 9.0615
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40049.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-103276345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+eE +l+ +a + + ++   +W+++a++++ g+t  +++  + 
       KHN40049.1 32 KWTPEENKLFENALAVHDKDtpdRWHKVAEMIP-GKTVVDVIRQYK 76
                     8********************************.******998886 PP

2Myb_DNA-binding44.73.2e-14138182347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
       KHN40049.1 138 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 182
                      8*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-52776IPR009057Homeodomain-like
PROSITE profilePS5129310.6272883IPR017884SANT domain
SMARTSM007176.2E-112981IPR001005SANT/Myb domain
SuperFamilySSF466894.99E-123183IPR009057Homeodomain-like
PfamPF002494.5E-93277IPR001005SANT/Myb domain
CDDcd001673.07E-93278No hitNo description
PROSITE profilePS5129421.348131187IPR017930Myb domain
SuperFamilySSF466899.72E-17133186IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17134186IPR006447Myb domain, plants
SMARTSM007175.3E-13135185IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-12135182IPR009057Homeodomain-like
PfamPF002491.1E-12138182IPR001005SANT/Myb domain
CDDcd001675.25E-11138183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MKWESITLSS PTSCTPNSNT NWLVENNSRS TKWTPEENKL FENALAVHDK DTPDRWHKVA  60
EMIPGKTVVD VIRQYKELEV DVSNIEAGLI PVPGYSSTAI SPFTLDWVNT PGYDGFKGCG  120
KRPSSVRPIE HERKKGVPWT EEEHKLFLLG LKKYGKGDWR NISRNFVITR TPTQVASHAQ  180
KYFIRQLSGG KDKRRASIHD ITTVNLTETI TTSCSEDTNR STSPHVLSQP QQQNSTPTTP  240
RTHFQWTNQS NTGVAMTLNP AHERVFMSPY GANSFGVKIE GQNLHESSYL GPQTQNMVFQ  300
MQQSSQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1433991177RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-172AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235675.10.0MYB transcription factor MYB57
SwissprotQ8S9H71e-116DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0B2S6Z60.0A0A0B2S6Z6_GLYSO; Transcription factor MYB1R1
TrEMBLI1MB920.0I1MB92_SOYBN; Uncharacterized protein
STRINGGLYMA14G37050.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.16e-82MYB family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]